Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs7730157 chr5:54596867 A/G 6.61E-5 374 22.33 23.43 9.67 KM Plot
CRC rs7735748 chr5:54655118 C/T 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs77374381 chr6:53530662 A/G 2.83E-5 371 22.32 24.77 7.13 KM Plot
CRC rs77433192 chr7:62028382 C/T 6.49E-7 361 22.53 20.05 11.27 KM Plot
CRC rs7748828 chr6:53517643 A/C 6.9E-5 373 22.3 24.5 7.13 KM Plot
CRC rs77692990 chr22:50219952 C/T 2.38E-8 364 21.3 26.33 7.9 KM Plot
CRC rs77771017 chr6:53529014 C/T 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs7778885 chr7:57744188 A/T 5.36E-7 368 11.27 20.27 23.37 KM Plot
CRC rs7784166 chr7:57826577 T/C 1.71E-6 369 23.3 20.58 11.92 KM Plot
CRC rs7784364 chr7:57708815 T/C 1.96E-6 371 11.92 20.58 23.3 KM Plot
CRC rs7784828 chr7:57709129 C/T 1.59E-6 374 23.33 20.47 11.27 KM Plot
CRC rs7786796 chr7:62007904 C/A 8.56E-7 365 22.83 20.23 11.27 KM Plot
CRC rs7787511 chr7:57779934 G/C 1.91E-6 371 23.37 20.58 11.92 KM Plot
CRC rs7787741 chr7:57714650 T/C 1.96E-6 371 11.92 20.58 23.3 KM Plot
CRC rs77985073 chr6:53526949 C/A 2.75E-5 372 22.3 24.77 7.13 KM Plot